Week 5: Fish, Fishes, and More Fish

Monday: We had lovely weather for our beam trawls out in the Yaquina Bay estuary. We went in three groups out on the R/V Elakha, which we learned means otter. We had a guest scientists, Dr. Lorenzo Cannelli, teach us to use beam trawls and deploy CTDs to take salinity, temperature, oxygen, and depth measurements. Our trawls were focused on catching, measuring, and counting juvenile English sole (Parophrys vetulus). We also found some gunnels, a showy snailfish, and tons of shrimp and juvenile crabs! We sampled upstream and downstream in the bay to see if there was a difference in density, mean size, and size range. The final cruise found the largest English sole of the day at 15.6 cm. After returning from the trawls and a lunch break we went to class and had a lecture on early life history and recruitment of fishes. Then we did our data analysis on the trawl data we gathered that morning.  

Kendal deploying the CTD with Dr. Lorenzo Ciannelli's guidance. 

Students measuring and counting English sole.

Tuesday: We spent the morning in lectures on age and growth; swimming, schooling and migration; and scientific writing to begin preparing for the trawl reports. After lunch, we got a chance to go out into the field again before the long night of writing ahead. We went to Tokatee Klootchman State Park and hunted fish among the tidepool. At the end of our hour of searching and catching fish, we held the award for the biggest, smallest, most unique, most colorful, and best Cabezon caught. We also had one of the highest catches from the tidepools in BI 450 history. Good Job Everyone! After returning from the field, when we were identifying the fish, we found that we had caught a ringtail snailfish (Liparis rutteri). What is interesting about finding the ringtail in Tokatee Klootchman was that in our guide books, they said that the most southern places it has been reported was southern Alaska. Which is cool for us, seeing it so far south in Oregon, meaning that they may be possible migrating down to more southern waters, and we may be seeing more of them. Another cool find was a silver Cabazon (Scorpaenichthys marmoratus), the silver color is due to the Cabazon just migrating from the open ocean to tidepools. It was a late night (and early morning for some) writing to prepare our trawl reports for peer revision Wednesday.

Searching for tidepool fish at Tokatee Klootchman State Park.

A collection of sculpins we found at Tokatee.

Wednesday: We began the day with lecture on the different way fish feed and food webs in the ocean. Then we had a break for donuts and coffee in the staff lounge. After that, we got a temporary break from fish and had a guest lecture about plankton ecology from Dr. Moritz Schmid. We learned about various tehnologies for collecting zooplankton; including the coupled multiple opening/closing net and environmental sensing system (MOCNESS) that Su helped design and how artificial intelligence is being used to conduct image analysis to obtain higher resolutions for plankton counts. After a break for lunch, we brought our trawl reports in and peer reviewed each others papers, providing edits and feedback to improve our final papers. We ended the day by learning how to prepare and deploy light traps out to catch zooplankton, which we deployed off the pumphouse docks in Yaquina Bay. Finally, we went home and made final adjustments and edits to our trawl reports based on our peers’ feedback and prepared for a busy Thursday.

Students after deploying the light traps. Students after retrieving the light traps.

Thursday: We retrieved our light traps first thing in the morning to see what caught. Before we got to identify the zooplankton and juvenile fish from the traps we had to turn in the trawl reports and we had our final lecture for the term! We learned about population ecology and fish conservation, a precursor to our Marine Policy section in a few weeks. Then we got to identify and enumerate the juvenile fishes and zooplankton our light traps caught. We learned to use a sieve to separate and count the large organisms(over 3.3 mm) and a stempel pipette to take 5 mL subsamples to count the small organisms(under 3.3 mm). After lunch, we split into groups and got to print fish with the help of guest artist Bruce Koike. It was a nice break and a creative outlet. With the trawl report turned in and the last lecture over, our attention turned to studying for Friday’s final and the end of the section.

The class showing off our fish prints!

Friday: Another week, another final. After a busy week full of fishes, papers, and field work we spent the morning studying and finishing notebooks to prepare for the end of the fishes section. In the afternoon we took our final, cleaned the lab, released our fishes back into the estuary and turned in our field and lab notebooks. We then headed for a relaxing weekend in between our next course, Community Ecology starting Monday.

Week 8: Community Ecology Papers and Presentations

Monday: Kicking off another week with Bruce, but this week we get to sleep in past 5 am. We started off with a lecture on variations in marine communities in the morning. Then in the afternoon we wrapped up our predator feeding rates experiment. Unfortunately a couple of our Pisaster ochraceus started showing signs of wasting. So they were isolated until all the Pisaster could be replaced in the field. After that we broke into teams and started working on our presentations.

That evening we had our last guest lecture by Alissa Rickborn and got to learn about her work with sponges. After her presentation we got to see her lab setup. It was really cool to see everything from how they adjust pH to how her sponges are going to be held.

Tuesday: Busy day, from early in the morning until late at night everyone was working to try and process their data and create the slideshow that they would present on Wednesday. Our poor TA Barbara spent all day helping everyone with their data processing, but by the end of the day most everyone had it all sorted out. So after she went home after her very long day everyone else pressed on, getting everything prepared for the next day.

Wednesday: Presentation Day! Early in the morning you could find pretty much everyone back at the library, putting the final polish onto their slideshows and practicing for their speech later. After a quick lunch it was time for presentations. Everyone is now more comfortable giving presentations after all the practice we've had this semester. It was really neat to see how the various projects and experiments over the last week had gone. It was also crazy to learn that at one of the sites there were over 5,000 Nucella ostrina that were sampled for the Small Predator Abundance and Size surveys.

After presentations we had our last review session of the semester with Bruce. After which it was cram time for our last exam and preparing the written reports that were due the next evening.

Thursday: While some of the class was finished with their papers early and prepared for the exam, some of us woke up and got right back to typing. Ready or not though, it was exam time. As we all sat down for our exam you could once again almost feel the stress in the air, but once the exams were passed out you could feel everyone relax. We had this. After wrapping up our exams and getting our papers submitted it was once again time to get back to writing. But this time it was for our own projects. We got to write our project proposals for the projects that we are going to be working on for the next two weeks.

Friday: Project kick off day!!!!! With the return of Sally, Sarah, Su, and Rebecca along with Barbara who never left, it was time to kick of projects! After giving a run down of what was and wasn't allowed, and making sure that we would treat our animals as humanely as possible, we broke up and switched to small group interviews. Our teachers met with each project group to discuss what they would be working on for the next two weeks, along with offering advice on what they could do to improve their projects.

And that ended our crazy week, but tune in the next couple of weeks to hear more about our projects!!!

Not a lot of photos this week so have a Tardigrade!

Week 2: Crabs and Presentations and Finals – Oh, My!By Julia Bingham and Kylee Enyart

Last Monday, we started off the week right with a good stroll down to Yaquina Bay. Our guest speaker and guide for the day, Dr. Sylvia Yamada, led the group out to collect the catch from crab traps set out the previous day. Dr. Yamada and the students recorded species, sex, and carapace size of each species of crab collected, including natives like the Red Rock Crab (Cancer productus) and the Dungeness Crab (Cancer magister), which were released back to their home. We also snagged some specimens of the invasive European Green Cab (Carcinus maeans), which were brought back to the lab.

Julia holding our prime catch of the day: an invasive Carcinus maeans specimen. (Photo credit to Issie Corvi)

Dr. Sylvia Yamada lead the group in a discussion of life history of the European Green Crab in the Pacific NW, and the impacts of invasive species. The species arrived with trading imports from Europe in San Francisco in the 1980’s. Following a series of warm-ocean and current shifting events, especially the El Niño event of 1997, the planktonic larvae of C. maeans made its way northward, establishing in Oregon and B.C. It’s been a pesky competitor to other crabs and a voracious predator of bivalves and disruptor of seagrass beds ever since.

Tuesday featured another guest speaker discussion with Dr. John Chapman on invasive species. This time, we learned about the invasive parasite Orthione griffinis, a blood-sucking isopod which lives tucked next to the gills of the blue mud shrimp (Upogebia pugettensis). The isopod is as widespread as the shrimp itself, from Alaska to southern California, and has wiped out most of the shrimps’ populations by effectively castrating the female shrimp it invades. Even in the relatively healthy population of Yaquina Bay, our own collection day last week found several infected U. pugettensis individuals.

That afternoon, we ventured to the Newport bay docks, collecting even MORE invertebrates. We hoped to find some Ctenophores, and Scyphozoans, but mostly just observed more smelly, mischievous sea lions instead.  We did end up finding two new species of Nudibrach, skeleton shrimp, and even some cool tunicates and bryozoans!

Side Note: Beware the dog poop

A near perfect specimen of Pisaster brevispinus, spotted on the docks.

On Wednesday, we held the 10^th Annual Group Extravaganza! Students chose their favorite invertebrate and wrote a paper about it as a part of the course. Wednesday’s event was for us to take what we learned from those reports and present our favorite creature to the class. Sharing fun facts lasted four hours, but cheesecake and comedy came along with some really entertaining and interactive presentations, so it went by in a flash.

David had a great chat with Red, the tube worm vibrant in both in color and character. Max told the heart-wrenching love story between the ocean queen and Chris (short for Crustacean - it's a family name), a tale to explain the creation of the beautiful floating blue hydra Velella velella. Julia presented on the gooseneck barnacle (Pollicipes polymerus), with a carapace for a hat.

On Thursday, the theme switched from learning to ingraining information. It was time to study our marine invertebrate friends. With much anticipation, the whole day was spent preparing for our final. This consisted of the invertebrates’ Latin names, Phylum and Genus, and Phylum-specific information, including body symmetry, body plan, tissue layers, sensory and feeding structures, along with many other important aspects. The students also completed their notebooks to turn in. Everyone had to create ten pages of drawings and descriptions of some of the species we have found during our field work. Here are some of David's as examples of what we were all working on:

On Friday, the sleep-deprived and over-caffeinated BI 450 group took their first much awaited exam and lab practicum. It actually went great, and the day ended with some bitter-sweet goodbyes and “until next times” with Dr. Hacker and Vanessa.

Many students spent the weekend relaxing at home to recover from the intensity of the previous couple of days. Those who stayed at Hatfield spent Saturday volunteering at Hatfield’s Marine Science Day. It was SO incredibly fun! The whole research center, along with NOAA, Oregon Fish and Wildlife, and a few other organizations opened up countless exhibits throughout the whole center and invited the public to come and learn. The campus filled with curious community members and enthusiastic children. BI 450 students opened up our lab to share our marine invertebrate specimens and new knowledge  to visitors.

The day ended with a beautiful walk on the beach, ready and waiting for the beginning of our next section of classes, starting Monday: it’s time to learn about fish!